Ruby and Sapphire find out that Archie and Maxie, the leaders of evil Team Aqua and equally evil Team Magma, are using the Blue Orb and the Red Orb to control two Legendary Pokémon, Kyogre and Groudon.
Trainer Amarillo del Bosque Verde, while on the hunt for the famous Pokémon Trainer, Red, continues to gather other Trainers, Gym Leaders and even a few enemies to fight against the team known as the Elite Four!